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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81138812_81138959_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81138812 - 81138959
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTCAATTAATT
Flanking Amino Acid:
FASLLQELGVDKDDVSAVKD
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
73.7
32.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.1
0.77
0.7
80.6
24.7
Minor 5ss
26.1
-2.7
2.9
22.6
37.5
Minor BPS
57.3
0.31
1.8
77.07
38.7

Associated Gene:

Gene:
ITFG2
Ensembl Gene ID:
ENSAPLG00000011976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047431
81137479 - 81150169
12691
ENSAPLT00000012482
81138666 - 81150072
11407