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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81147633_81148337_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81147633 - 81148337
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
AATCAATTGACT
Flanking Amino Acid:
GVGDVCNKGKNLVVAVSAEG
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
88.7
0.87
0.6
89.2
19.8
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
50.1
0.08
1.8
70.8
39.1

Associated Gene:

Gene:
ITFG2
Ensembl Gene ID:
ENSAPLG00000011976
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047431
81137479 - 81150169
12691