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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81152868_81155091_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81152868 - 81155091
Intron Length:
2224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CAATTTTGAATA
Flanking Amino Acid:
FQRLADKDLKSATTLQTTHT
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.7
0.56
0.9
73.6
37
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
52.6
0.08
1.4
57.45
36.2

Associated Gene:

Gene:
FKBP4
Ensembl Gene ID:
ENSAPLG00000012198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012729
81152223 - 81166814
14592