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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81155332_81156492_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81155332 - 81156492
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTAGGA
5'SS Class:
major
3'SS Sequence:
TTTTTAAATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTTTTTTAAAT
Flanking Amino Acid:
YSQALENCNKALELDSSNEK
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.9
40.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.5
0.69
0.9
75.7
37.3
Minor 5ss
28.5
-2.5
3.5
38.8
46.3
Minor BPS
66.3
0.59
1.4
75.95
41.3

Associated Gene:

Gene:
FKBP4
Ensembl Gene ID:
ENSAPLG00000012198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012729
81152223 - 81166814
14592