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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81157963_81159297_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81157963 - 81159297
Intron Length:
1335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
CCCAATCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGTTTTTCAACT
Flanking Amino Acid:
SEESIFYLKPNYGFGSAGKE
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.1
0.52
0.9
68.6
36.8
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
65.1
0.55
1.5
79.04
36.9

Associated Gene:

Gene:
FKBP4
Ensembl Gene ID:
ENSAPLG00000012198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012729
81152223 - 81166814
14592