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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81160121_81162768_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81160121 - 81162768
Intron Length:
2648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTAAAT
U12 Branch Point Sequence:
CTTCCCTGCACA
Flanking Amino Acid:
IPPNATLIFEIELFEFKGED
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
73
0.52
0.9
67.8
32.3
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
54.3
0.13
2
69.78
42.3

Associated Gene:

Gene:
FKBP4
Ensembl Gene ID:
ENSAPLG00000012198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012729
81152223 - 81166814
14592