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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81164350_81166730_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81164350 - 81166730
Intron Length:
2381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTCATAATCT
Flanking Amino Acid:
TLKRDEGVLKVVKREGSGTE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
57.3
43.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
42.1
-0.9
3.4
60.1
44.6
Minor BPS
51.9
0.14
2.2
78.51
43.3

Associated Gene:

Gene:
FKBP4
Ensembl Gene ID:
ENSAPLG00000012198
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012729
81152223 - 81166814
14592