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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81195885_81196530_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81195885 - 81196530
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTATGCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATGC
Flanking Amino Acid:
VVAGTNYFIKVHVGNDEFVH
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.8
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.3
0.7
0.9
77.9
36.3
Minor 5ss
28.9
-2.4
3.6
40.1
46.3
Minor BPS
51.3
0.02
1.9
64.86
41.7

Associated Gene:

Gene:
CSTB
Ensembl Gene ID:
ENSAPLG00000016697
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038072
81195756 - 81199126
3371