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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81203915_81206779_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81203915 - 81206779
Intron Length:
2865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACCC
5'SS Class:
major
3'SS Sequence:
ACTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTGACAAACC
Flanking Amino Acid:
CPDGEYSDETDASACDKCPE
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
65.3
38.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
86.9
0.83
0.7
84.6
29.4
Minor 5ss
33.3
-1.9
3
43.9
43.3
Minor BPS
41.7
-0.6
2.4
60.07
45

Associated Gene:

Gene:
CASR
Ensembl Gene ID:
ENSAPLG00000006014
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006245
81201921 - 81239262
37342