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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81206904_81210856_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81206904 - 81210856
Intron Length:
3953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
CTACCATTAACC
Flanking Amino Acid:
KILWSGFSKEVPFSNCSRDC
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
63.2
0.39
1.7
70.36
40.3

Associated Gene:

Gene:
CASR
Ensembl Gene ID:
ENSAPLG00000006014
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006245
81201921 - 81239262
37342