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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81226394_81229668_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
81226394 - 81229668
Intron Length:
3275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
TGTGCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
GTCTCTTTTACT
Flanking Amino Acid:
NLLGLFYIPQVSYASSSRLL
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
80
0.68
0.9
73.4
37
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
67.6
0.64
1.6
80.63
41.2

Associated Gene:

Gene:
CASR
Ensembl Gene ID:
ENSAPLG00000006014
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006245
81201921 - 81239262
37342