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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81229976_81238611_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81229976 - 81238611
Intron Length:
8636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TTCACTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTGTTTCACT
Flanking Amino Acid:
KSRPESVECIRYNFRGFRWL
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.3
0.61
0.8
69.1
36.9
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
62.2
0.46
2.2
87.23
39

Associated Gene:

Gene:
CASR
Ensembl Gene ID:
ENSAPLG00000006014
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006245
81201921 - 81239262
37342