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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81298815_81299544_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81298815 - 81299544
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TCATTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTCTGTAAAT
Flanking Amino Acid:
KNRNISSTSQSVSLPV*
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.4
0.66
0.8
78.2
34.7
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
59.6
0.38
2.1
81.87
39.5

Associated Gene:

Gene:
CD86
Ensembl Gene ID:
ENSAPLG00000016703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039444
81296386 - 81313658
17273