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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81302311_81306797_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81302311 - 81306797
Intron Length:
4487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGTGTCCAACTC
Flanking Amino Acid:
HKSECSLSIIANYSQPEITQ
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
79.3
0.66
0.9
76.4
37.7
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
39.6
-0.8
2.1
50.52
40.9

Associated Gene:

Gene:
CD86
Ensembl Gene ID:
ENSAPLG00000016703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039444
81296386 - 81313658
17273