About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81307140_81308531_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81307140 - 81308531
Intron Length:
1392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTTCTTATCT
Flanking Amino Acid:
FFLHVIILLPGITASGHQVK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.9
0.78
0.9
90.5
22.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
70.3
0.71
1.5
83.35
37.4

Associated Gene:

Gene:
CD86
Ensembl Gene ID:
ENSAPLG00000016703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039444
81296386 - 81313658
17273