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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81308582_81310590_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81308582 - 81310590
Intron Length:
2009

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACTTGCTTAATT
Flanking Amino Acid:
SSAPILTHKESIMEVCIFFL
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.8
86.2
29.6
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
88.5
0.87
0.6
83.5
25
Minor 5ss
23.7
-3
4
39.7
45.9
Minor BPS
69.4
0.69
1.7
81.92
40.2

Associated Gene:

Gene:
CD86
Ensembl Gene ID:
ENSAPLG00000016703
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039444
81296386 - 81313658
17273