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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81340909_81341109_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81340909 - 81341109
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAGGT
5'SS Class:
major
3'SS Sequence:
TCCTTATCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TGCTCCTTATCC
Flanking Amino Acid:
ARRAPAALRRGAFITLCFGA
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65.9
40.1
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
74.8
0.56
0.8
73.7
30.2
Minor 5ss
26.3
-2.7
3.3
30
43
Minor BPS
69.7
0.6
1.6
75.09
41.5

Associated Gene:

Gene:
MAN1A2
Ensembl Gene ID:
ENSAPLG00000009246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045556
81340829 - 81474188
133360