Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81370005_81372385_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81370005 - 81372385

Intron Length:

2381

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATATG

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTTTGAAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

AATTAAATAATT

Flanking Amino Acid:

IREKRNKIKECVASHRQTKD

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

84.2

33.9

Major BPS

81.8

0.79

1.1

34.5

Major PPT

80.9

0.69

82.9

32.5

Minor 5ss

38.7

-1.3

2.9

50.6

45.9

Minor BPS

48.5

-0

71.47

38.6

Associated Gene:

Gene:

MAN1A2

Ensembl Gene ID:

ENSAPLG00000009246

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023957

81353395 - 81473798

120404

ENSAPLT00000009648

81340979 - 81473798

132820