Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81388794_81407710_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81388794 - 81407710

Intron Length:

18917

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGGCTAT

5'SS Class:

major

3'SS Sequence:

TTTTTGTGTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

AAATCTTTATTT

Flanking Amino Acid:

ARKGHSTNIFGNSQMGATIV

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.5

0.55

1.1

67.6

40.2

Major BPS

84.4

0.85

1.1

34.5

Major PPT

80.3

0.68

0.9

77.2

37.1

Minor 5ss

44.3

-0.6

3.2

60.4

46.7

Minor BPS

60.9

0.42

1.5

72.35

38.8

Associated Gene:

Gene:

MAN1A2

Ensembl Gene ID:

ENSAPLG00000009246

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009648

81340979 - 81473798

132820

ENSAPLT00000045556

81340829 - 81474188

133360

ENSAPLT00000043542

81340979 - 81474798

133820

ENSAPLT00000023957

81353395 - 81473798

120404