Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81407830_81410190_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81407830 - 81410190

Intron Length:

2361

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTAGA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTTAC

U12 Branch Point Sequence:

AATTACTTACAT

Flanking Amino Acid:

WIDKNLDFSVNSEVSVFEVN

Intron Amino Acid Position:

279

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.8

35.2

Major BPS

73.7

0.59

0.9

63.6

35.1

Major PPT

83.1

0.74

0.9

80.3

37.3

Minor 5ss

29.8

-2.3

2.6

30.5

37.5

Minor BPS

54.4

0.22

1.9

74.36

41.6

Associated Gene:

Gene:

MAN1A2

Ensembl Gene ID:

ENSAPLG00000009246

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045556

81340829 - 81474188

133360

ENSAPLT00000043542

81340979 - 81474798

133820

ENSAPLT00000023957

81353395 - 81473798

120404

ENSAPLT00000009648

81340979 - 81473798

132820