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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81432084_81432512_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81432084 - 81432512
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGATTTAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATTCTTGATT
Flanking Amino Acid:
LTGDPVYYNKVMHIRKLLQK
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.9
85.3
32.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
69.5
0.44
1
67.9
42.4
Minor 5ss
38.9
-1.2
3.1
53.5
43.9
Minor BPS
71.2
0.75
1.1
79.97
35.9

Associated Gene:

Gene:
MAN1A2
Ensembl Gene ID:
ENSAPLG00000009246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045556
81340829 - 81474188
133360
ENSAPLT00000043542
81340979 - 81474798
133820
ENSAPLT00000023957
81353395 - 81473798
120404
ENSAPLT00000009648
81340979 - 81473798
132820