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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81432607_81451938_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81432607 - 81451938
Intron Length:
19332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ACATCTTCAATT
Flanking Amino Acid:
LNPRTGRWGQHHTSVGGLGD
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
81.8
38.5
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
85.7
0.8
0.7
80.9
24.3
Minor 5ss
42.6
-0.8
2.9
56
41.5
Minor BPS
60.6
0.41
1.5
71.24
40.2

Associated Gene:

Gene:
MAN1A2
Ensembl Gene ID:
ENSAPLG00000009246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009648
81340979 - 81473798
132820
ENSAPLT00000045556
81340829 - 81474188
133360
ENSAPLT00000043542
81340979 - 81474798
133820
ENSAPLT00000023957
81353395 - 81473798
120404