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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81458537_81463351_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81458537 - 81463351
Intron Length:
4815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATGC
5'SS Class:
major
3'SS Sequence:
CCTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTTCCTTTCTC
Flanking Amino Acid:
HTCHESYDRTTLKLGPEAFK
Intron Amino Acid Position:
522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.7
36.1
Major BPS
66.1
0.4
1
73
31.5
Major PPT
85.7
0.8
0.7
80.5
24.8
Minor 5ss
40
-1.1
3.1
51.1
39.8
Minor BPS
47.3
-0.2
3.6
78.41
37.7

Associated Gene:

Gene:
MAN1A2
Ensembl Gene ID:
ENSAPLG00000009246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023957
81353395 - 81473798
120404
ENSAPLT00000009648
81340979 - 81473798
132820
ENSAPLT00000045556
81340829 - 81474188
133360
ENSAPLT00000043542
81340979 - 81474798
133820