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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81463525_81470541_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81463525 - 81470541
Intron Length:
7017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
YRQWGWEATQAIDKYCRVSG
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.5
32.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
41.8
-0.9
3.2
58.1
46.5
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
MAN1A2
Ensembl Gene ID:
ENSAPLG00000009246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023957
81353395 - 81473798
120404
ENSAPLT00000009648
81340979 - 81473798
132820
ENSAPLT00000045556
81340829 - 81474188
133360
ENSAPLT00000043542
81340979 - 81474798
133820