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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81470658_81473665_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81470658 - 81473665
Intron Length:
3008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTGT
5'SS Class:
major
3'SS Sequence:
TATTGATATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TCTGTATTGATA
Flanking Amino Acid:
QQSFFLAETLKYLYLLFSND
Intron Amino Acid Position:
618

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
72.5
39.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
68.5
0.42
1
60
45.1
Minor 5ss
47.3
-0.3
2.9
64.8
40.8
Minor BPS
49.7
-0
1.7
62.16
38.6

Associated Gene:

Gene:
MAN1A2
Ensembl Gene ID:
ENSAPLG00000009246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043542
81340979 - 81474798
133820
ENSAPLT00000023957
81353395 - 81473798
120404
ENSAPLT00000009648
81340979 - 81473798
132820
ENSAPLT00000045556
81340829 - 81474188
133360