About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81496949_81499881_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81496949 - 81499881
Intron Length:
2933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAT
U12 Branch Point Sequence:
TGCAACCTAACT
Flanking Amino Acid:
TQLLWEVNVTGTQMLLEACT
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
62.5
0.31
1.2
69
38.9
Major PPT
80.2
0.68
1
82.4
26.6
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
51
0.11
1.9
71.75
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009354
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009729
81496134 - 81504993
8860
ENSAPLT00000002049
81496134 - 81515802
19669