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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81501492_81504770_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81501492 - 81504770
Intron Length:
3279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTTCACATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGAGCATTTACT
Flanking Amino Acid:
FSSEALRSFGNQGAVKREKK
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
75.3
0.57
0.9
70.7
39.5
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
49.7
0.06
2
71.15
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009354
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009729
81496134 - 81504993
8860