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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81504994_81514267_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
81504994 - 81514267
Intron Length:
9274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCAAATG
5'SS Class:
major
3'SS Sequence:
TCTGTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
AGACTCTGGAGG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1
65
40.7
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
85.1
0.79
0.8
83.9
31.1
Minor 5ss
29.9
-2.3
3.2
39.5
46
Minor BPS
41.8
-0.7
1.7
40.16
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009354
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002049
81496134 - 81515802
19669