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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81514401_81515732_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
81514401 - 81515732
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ACATGTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
79.9
0.67
0.9
77.3
35.4
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
58.3
0.34
1.7
70.49
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009354
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002049
81496134 - 81515802
19669
Gene:
HAO2
Ensembl Gene ID:
ENSAPLG00000009731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010129
81514268 - 81522352
8085