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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81515803_81517867_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81515803 - 81517867
Intron Length:
2065

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTACCCTGACT
Flanking Amino Acid:
RPALWGLAYKGEEGLQDVLK
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
74.2
0.6
1
67
39.4
Major PPT
69.3
0.44
1.1
66.3
44
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
69.6
0.7
1.7
89.46
34.4

Associated Gene:

Gene:
HAO2
Ensembl Gene ID:
ENSAPLG00000009731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010129
81514268 - 81522352
8085