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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81521607_81522179_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81521607 - 81522179
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTGCCTTACAG
Flanking Amino Acid:
TRDENILAYKRIHFRPRMLR
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80.7
0.69
0.9
73.3
36.9
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
53.9
-0
1.9
62.9
44.8

Associated Gene:

Gene:
HAO2
Ensembl Gene ID:
ENSAPLG00000009731
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010129
81514268 - 81522352
8085