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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81529444_81530093_F

Intron Information:

Intron Rank:
144142
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
81529444 - 81530093
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTGGACACAGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTGTCTTGTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.9
73.2
40.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
59.7
0.22
1.1
53.3
41.1
Minor 5ss
28
-2.5
4
41.8
45
Minor BPS
60.5
0.41
1.8
80.58
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027684
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020639
81529278 - 81531559
2282