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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81564442_81564728_R

Intron Information:

Intron Rank:
146069
Intron Class:
major
Intron Phase:
Intron Coordinates:
81564442 - 81564728
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
GTTGTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTGTCATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
76
33.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
76.7
0.6
0.9
66.7
40.6
Minor 5ss
49
-0.1
2.4
68.6
42
Minor BPS
57.9
0.11
1.8
67.5
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025994
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035706
81564285 - 81566036
1752