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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81611119_81613204_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81611119 - 81613204
Intron Length:
2086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCA
5'SS Class:
major
3'SS Sequence:
TCTGTGATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTCTGTGATT
Flanking Amino Acid:
PGRAPRDPRPAVFHWSKRFI
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.7
39.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
77.5
0.62
0.9
73.7
40.5
Minor 5ss
35
-1.7
3.5
47.9
47.8
Minor BPS
58.8
0.36
2
80.58
35.7

Associated Gene:

Gene:
WARS2
Ensembl Gene ID:
ENSAPLG00000009702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019555
81610983 - 81651521
40539