Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81611119_81623643_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81611119 - 81623643

Intron Length:

12525

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACGGCA

5'SS Class:

major

3'SS Sequence:

TTCTGTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTGAG

U12 Branch Point Sequence:

TTTGAGCCAACT

Flanking Amino Acid:

PGRAPRDPRPGCRLLRCPLA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.2

66.7

39.1

Major BPS

63.6

0.34

1.5

63.1

44.4

Major PPT

84.4

0.77

0.7

80.5

31.5

Minor 5ss

-1.7

3.5

47.9

47.8

Minor BPS

41.4

-0.5

2.6

70.03

46.3

Associated Gene:

Gene:

WARS2

Ensembl Gene ID:

ENSAPLG00000009702

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028782

81610983 - 81651521

40539