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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81611119_81632626_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81611119 - 81632626
Intron Length:
21508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCA
5'SS Class:
major
3'SS Sequence:
TGCTTTGTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CTTATGTTAATT
Flanking Amino Acid:
RAARRGTLAQNMVVDRIFSG
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.2
66.7
39.1
Major BPS
84.4
0.85
1
84
34.5
Major PPT
73.2
0.52
1
68.9
40.8
Minor 5ss
35
-1.7
3.5
47.9
47.8
Minor BPS
55.3
0.24
2.1
75.63
41.8

Associated Gene:

Gene:
WARS2
Ensembl Gene ID:
ENSAPLG00000009702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010105
81611065 - 81651521
40457