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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81646729_81649207_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81646729 - 81649207
Intron Length:
2479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTTTTATTAAAA
Flanking Amino Acid:
VLQAADILLYKSTHVPVGED
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.1
31.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
69.9
0.45
1.1
72.2
35.9
Minor 5ss
36.7
-1.5
3.5
51
39.9
Minor BPS
62
0.37
1.7
73.41
38.1

Associated Gene:

Gene:
WARS2
Ensembl Gene ID:
ENSAPLG00000009702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019555
81610983 - 81651521
40539
ENSAPLT00000010105
81611065 - 81651521
40457
ENSAPLT00000045644
81612827 - 81651521
38695
ENSAPLT00000038019
81620574 - 81651521
30948
ENSAPLT00000028782
81610983 - 81651521
40539