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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81735135_81749817_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81735135 - 81749817
Intron Length:
14683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TCTCCCTTATTT
Flanking Amino Acid:
GTEMIITKAGRRMFPAMRVK
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
90.2
0.9
0.6
84.6
30.4
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
67.7
0.63
1.6
81.24
40.8

Associated Gene:

Gene:
TBX15
Ensembl Gene ID:
ENSAPLG00000009645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010052
81734921 - 81775660
40740