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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81749920_81752226_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81749920 - 81752226
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGCCAT
U12 Branch Point Sequence:
CTTTCCTTAGCC
Flanking Amino Acid:
DIVPVDNKRYRYVYHSSKWM
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
54.4
0.11
1.4
64.4
42.8
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
75.9
0.79
1.5
82.36
38

Associated Gene:

Gene:
TBX15
Ensembl Gene ID:
ENSAPLG00000009645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010052
81734921 - 81775660
40740