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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81752399_81752843_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81752399 - 81752843
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
TNNELDDQGHIILHSMHKYQ
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
91.5
0.93
0.6
89.8
18.5
Minor 5ss
42
-0.9
2.8
53.8
43.6
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
TBX15
Ensembl Gene ID:
ENSAPLG00000009645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010052
81734921 - 81775660
40740