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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81756428_81763500_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
81756428 - 81763500
Intron Length:
7073

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCCATTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTCTCCTTACTT
Flanking Amino Acid:
AKGFRDSGRNRTGLEAIMET
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
77.6
0.62
0.8
72
32.3
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
67.3
0.62
1.7
79.08
43.9

Associated Gene:

Gene:
TBX15
Ensembl Gene ID:
ENSAPLG00000009645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010052
81734921 - 81775660
40740