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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81763599_81773527_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81763599 - 81773527
Intron Length:
9929

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AGGCTCTGAACA
Flanking Amino Acid:
EDFTTMQKQQGGSTGTSPTT
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.5
32.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
34.5
-1.8
3.4
46.2
49.1
Minor BPS
55.1
0.16
1.4
60.95
38.4

Associated Gene:

Gene:
TBX15
Ensembl Gene ID:
ENSAPLG00000009645
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010052
81734921 - 81775660
40740