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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81837158_81838591_R

Intron Information:

Intron Rank:
135230
Intron Class:
major
Intron Phase:
Intron Coordinates:
81837158 - 81838591
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGCAGTA
5'SS Class:
major
3'SS Sequence:
TCAAATATGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
TTGTCTTGCAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.1
40.1
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
60.1
0.23
1.1
54.2
44.2
Minor 5ss
38.2
-1.3
3.7
55.5
48.7
Minor BPS
49.3
0.03
2
73.83
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040562
81834405 - 81839557
5153