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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81904254_81906948_F

Intron Information:

Intron Rank:
136015
Intron Class:
major
Intron Phase:
Intron Coordinates:
81904254 - 81906948
Intron Length:
2695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTACCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.3
0.57
0.8
71.3
34
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
69.5
0.69
1.5
82.89
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023272
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030313
81904036 - 81907087
3052