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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81904254_81914051_F

Intron Information:

Intron Rank:
136016
Intron Class:
major
Intron Phase:
Intron Coordinates:
81904254 - 81914051
Intron Length:
9798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTATATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTCCTATATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
78.4
0.64
0.9
69.6
40.1
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
65.6
0.57
2
87.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023272
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041680
81903335 - 81914353
11019
ENSAPLT00000033594
81904036 - 81914353
10318