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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_81983810_81984139_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
81983810 - 81984139
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCCAA
5'SS Class:
major
3'SS Sequence:
TATTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTTCCTTACAG
Flanking Amino Acid:
VVTREDIFRQIAESGNQKGK
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
59.6
40.9
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87
0.83
0.7
81
30.8
Minor 5ss
43.3
-0.7
2.8
56.2
48
Minor BPS
64.5
0.32
1.8
71.23
41.5

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091