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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82000810_82005488_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
82000810 - 82005488
Intron Length:
4679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTACAGTAT
5'SS Class:
weak_major
3'SS Sequence:
TTCATCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTTTCTTCATCT
Flanking Amino Acid:
LQRREAEKKVAEEELKKEKD
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.5
0.11
1.1
55.6
38
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
76.8
0.6
1
76.8
37.2
Minor 5ss
38.5
-1.3
3.7
55.6
44.6
Minor BPS
61
0.42
1.8
81.04
40.7

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091