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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82007580_82013407_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
82007580 - 82013407
Intron Length:
5828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATCTAATA
Flanking Amino Acid:
LQEESLLSPEDVEAEKRKKD
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71.9
0.49
1
68.2
42
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
60.5
0.33
1.8
76.96
33.8

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091