Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82019695_82020301_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

82019695 - 82020301

Intron Length:

607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATAGTGC

5'SS Class:

major

3'SS Sequence:

TTTTTTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAC

U12 Branch Point Sequence:

TTTACTTTAACT

Flanking Amino Acid:

TLAQRLHLLKVQDNLNPEKI

Intron Amino Acid Position:

262

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

59.8

Major BPS

77.3

0.68

79.3

29.4

Major PPT

91.3

0.93

0.7

84.6

Minor 5ss

42.5

-0.8

3.2

58.8

46.1

Minor BPS

85.9

1.21

96.79

27.9

Associated Gene:

Gene:

SPAG17

Ensembl Gene ID:

ENSAPLG00000009356

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009749

81979268 - 82082358

103091

ENSAPLT00000009744

81997012 - 82022422

25411