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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_82031840_82033675_F

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
82031840 - 82033675
Intron Length:
1836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGTGCTGT
5'SS Class:
weak_major
3'SS Sequence:
AGAAGACCAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
ATGTGAGTAATT
Flanking Amino Acid:
GTAEGPSEFSETNVLLSLFT
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.5
0.18
1.1
52.1
41.6
Major BPS
70
0.5
1
67
39.8
Major PPT
44.4
-0.3
1.1
32.2
34.8
Minor 5ss
47.5
-0.2
2.8
60
45.8
Minor BPS
44.1
-0.3
2.5
67.02
44.2

Associated Gene:

Gene:
SPAG17
Ensembl Gene ID:
ENSAPLG00000009356
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009749
81979268 - 82082358
103091